Hi, I had ShinyProxy running well, then upgraded docker (to 25.0.3), but now am having issues.
- Issues occur with a vanilla
application.yml file(from https://www.shinyproxy.io/documentation/configuration/). - I’m using the latest ShinyProxy (3.0.2).
- I can run these apps manually with docker, and they work (e.g.
sudo docker run -p 3838:3838 openanalytics/shinyproxy-demo R -e 'shinyproxy::run_01_hello()') - I’ve modified my docker configuration (with
sudo systemctl edit docker) suitable for my system (Ubuntu 20.04.6) and restarted docker.
The error I’m seeing is unlike any other posted here AFAIK:
which seems to be “Cannot construct instance of com.spotify.docker.client.messages.ImageInfo, problem: Null virtualSize”
Full trace below.
Any help on how to debug appreciated!
2024-03-06 15:13:24.717 INFO 86320 --- [pool-1-thread-1] e.o.containerproxy.service.ProxyService : [user=addb8458430a63180ed2b21046840af4684defab2b850aa19494dda58cf3d182 proxyId=245fd8bc-0ee2-4288-8735-d76ff773e7d1 specId=01_hello] Starting proxy
2024-03-06 15:13:25.443 WARN 86320 --- [pool-1-thread-1] e.o.containerproxy.service.ProxyService : [user=addb8458430a63180ed2b21046840af4684defab2b850aa19494dda58cf3d182 proxyId=245fd8bc-0ee2-4288-8735-d76ff773e7d1 specId=01_hello] Proxy failed to start
eu.openanalytics.containerproxy.ProxyFailedToStartException: Container with index 0 failed to start
at eu.openanalytics.containerproxy.backend.AbstractContainerBackend.startProxy(AbstractContainerBackend.java:116) ~[containerproxy-1.0.2.jar!/:1.0.2]
at eu.openanalytics.containerproxy.service.ProxyService.startOrResumeProxy(ProxyService.java:455) ~[containerproxy-1.0.2.jar!/:1.0.2]
at eu.openanalytics.containerproxy.service.ProxyService.lambda$startProxy$4(ProxyService.java:279) ~[containerproxy-1.0.2.jar!/:1.0.2]
at eu.openanalytics.containerproxy.service.ProxyService.lambda$action$11(ProxyService.java:599) ~[containerproxy-1.0.2.jar!/:1.0.2]
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515) ~[na:na]
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264) ~[na:na]
at java.base/java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1128) ~[na:na]
at java.base/java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:628) ~[na:na]
at java.base/java.lang.Thread.run(Thread.java:829) ~[na:na]
Caused by: eu.openanalytics.containerproxy.ContainerFailedToStartException: Docker container failed to start
at eu.openanalytics.containerproxy.backend.docker.DockerEngineBackend.startContainer(DockerEngineBackend.java:153) ~[containerproxy-1.0.2.jar!/:1.0.2]
at eu.openanalytics.containerproxy.backend.AbstractContainerBackend.startProxy(AbstractContainerBackend.java:108) ~[containerproxy-1.0.2.jar!/:1.0.2]
... 8 common frames omitted
Caused by: com.spotify.docker.client.exceptions.DockerRequestException: Request error: GET http://localhost:2375/images/openanalytics/shinyproxy-demo/json: 200
at com.spotify.docker.client.DefaultDockerClient.propagate(DefaultDockerClient.java:2840) ~[docker-client-8.16.0.jar!/:8.16.0]
at com.spotify.docker.client.DefaultDockerClient.request(DefaultDockerClient.java:2712) ~[docker-client-8.16.0.jar!/:8.16.0]
at com.spotify.docker.client.DefaultDockerClient.inspectImage(DefaultDockerClient.java:1509) ~[docker-client-8.16.0.jar!/:8.16.0]
at eu.openanalytics.containerproxy.backend.docker.DockerEngineBackend.isImagePresent(DockerEngineBackend.java:243) ~[containerproxy-1.0.2.jar!/:1.0.2]
at eu.openanalytics.containerproxy.backend.docker.DockerEngineBackend.startContainer(DockerEngineBackend.java:81) ~[containerproxy-1.0.2.jar!/:1.0.2]
... 9 common frames omitted
Caused by: javax.ws.rs.client.ResponseProcessingException: com.fasterxml.jackson.databind.exc.ValueInstantiationException: Cannot construct instance of `com.spotify.docker.client.messages.ImageInfo`, problem: Null virtualSize
at [Source: (org.glassfish.jersey.message.internal.ReaderInterceptorExecutor$UnCloseableInputStream); line: 1, column: 5410]
at org.glassfish.jersey.client.JerseyInvocation.translate(JerseyInvocation.java:884) ~[jersey-client-2.26-b03.jar!/:na]
at org.glassfish.jersey.client.JerseyInvocation.access$700(JerseyInvocation.java:98) ~[jersey-client-2.26-b03.jar!/:na]
at org.glassfish.jersey.client.JerseyInvocation$5.completed(JerseyInvocation.java:851) ~[jersey-client-2.26-b03.jar!/:na]
at org.glassfish.jersey.client.ClientRuntime.processResponse(ClientRuntime.java:197) ~[jersey-client-2.26-b03.jar!/:na]
at org.glassfish.jersey.client.ClientRuntime.access$300(ClientRuntime.java:74) ~[jersey-client-2.26-b03.jar!/:na]
at org.glassfish.jersey.client.ClientRuntime$2$1$1.run(ClientRuntime.java:167) ~[jersey-client-2.26-b03.jar!/:na]
at org.glassfish.jersey.internal.Errors$1.call(Errors.java:271) ~[jersey-common-2.26-b03.jar!/:na]
at org.glassfish.jersey.internal.Errors$1.call(Errors.java:267) ~[jersey-common-2.26-b03.jar!/:na]
at org.glassfish.jersey.internal.Errors.process(Errors.java:315) ~[jersey-common-2.26-b03.jar!/:na]
at org.glassfish.jersey.internal.Errors.process(Errors.java:297) ~[jersey-common-2.26-b03.jar!/:na]
at org.glassfish.jersey.internal.Errors.process(Errors.java:267) ~[jersey-common-2.26-b03.jar!/:na]
at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:303) ~[jersey-common-2.26-b03.jar!/:na]
at org.glassfish.jersey.client.ClientRuntime$2$1.response(ClientRuntime.java:165) ~[jersey-client-2.26-b03.jar!/:na]
at org.glassfish.jersey.apache.connector.ApacheConnector$1.run(ApacheConnector.java:498) ~[jersey-apache-connector-2.26-b03.jar!/:na]
at java.base/java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:515) ~[na:na]
at java.base/java.util.concurrent.FutureTask.run(FutureTask.java:264) ~[na:na]
at jersey.repackaged.com.google.common.util.concurrent.MoreExecutors$DirectExecutorService.execute(MoreExecutors.java:299) ~[jersey-guava-2.26-b03.jar!/:na]
at java.base/java.util.concurrent.AbstractExecutorService.submit(AbstractExecutorService.java:118) ~[na:na]
at jersey.repackaged.com.google.common.util.concurrent.AbstractListeningExecutorService.submit(AbstractListeningExecutorService.java:50) ~[jersey-guava-2.26-b03.jar!/:na]
at jersey.repackaged.com.google.common.util.concurrent.AbstractListeningExecutorService.submit(AbstractListeningExecutorService.java:37) ~[jersey-guava-2.26-b03.jar!/:na]
at org.glassfish.jersey.apache.connector.ApacheConnector.apply(ApacheConnector.java:494) ~[jersey-apache-connector-2.26-b03.jar!/:na]
at org.glassfish.jersey.client.ClientRuntime$2.run(ClientRuntime.java:181) ~[jersey-client-2.26-b03.jar!/:na]
at org.glassfish.jersey.internal.Errors$1.call(Errors.java:271) ~[jersey-common-2.26-b03.jar!/:na]
at org.glassfish.jersey.internal.Errors$1.call(Errors.java:267) ~[jersey-common-2.26-b03.jar!/:na]
at org.glassfish.jersey.internal.Errors.process(Errors.java:315) ~[jersey-common-2.26-b03.jar!/:na]
at org.glassfish.jersey.internal.Errors.process(Errors.java:297) ~[jersey-common-2.26-b03.jar!/:na]
at org.glassfish.jersey.internal.Errors.process(Errors.java:267) ~[jersey-common-2.26-b03.jar!/:na]
at org.glassfish.jersey.process.internal.RequestScope.runInScope(RequestScope.java:303) ~[jersey-common-2.26-b03.jar!/:na]
at org.glassfish.jersey.client.ClientRuntime$3.run(ClientRuntime.java:209) ~[jersey-client-2.26-b03.jar!/:na]
... 5 common frames omitted
Caused by: com.fasterxml.jackson.databind.exc.ValueInstantiationException: Cannot construct instance of `com.spotify.docker.client.messages.ImageInfo`, problem: Null virtualSize
at [Source: (org.glassfish.jersey.message.internal.ReaderInterceptorExecutor$UnCloseableInputStream); line: 1, column: 5410]
at com.fasterxml.jackson.databind.exc.ValueInstantiationException.from(ValueInstantiationException.java:47) ~[jackson-databind-2.13.4.2.jar!/:2.13.4.2]
at com.fasterxml.jackson.databind.DeserializationContext.instantiationException(DeserializationContext.java:2047) ~[jackson-databind-2.13.4.2.jar!/:2.13.4.2]
at com.fasterxml.jackson.databind.deser.std.StdValueInstantiator.wrapAsJsonMappingException(StdValueInstantiator.java:587) ~[jackson-databind-2.13.4.2.jar!/:2.13.4.2]
at com.fasterxml.jackson.databind.deser.std.StdValueInstantiator.rewrapCtorProblem(StdValueInstantiator.java:610) ~[jackson-databind-2.13.4.2.jar!/:2.13.4.2]
at com.fasterxml.jackson.databind.deser.std.StdValueInstantiator.createFromObjectWith(StdValueInstantiator.java:293) ~[jackson-databind-2.13.4.2.jar!/:2.13.4.2]
at com.fasterxml.jackson.databind.deser.ValueInstantiator.createFromObjectWith(ValueInstantiator.java:288) ~[jackson-databind-2.13.4.2.jar!/:2.13.4.2]
at com.fasterxml.jackson.databind.deser.impl.PropertyBasedCreator.build(PropertyBasedCreator.java:202) ~[jackson-databind-2.13.4.2.jar!/:2.13.4.2]
at com.fasterxml.jackson.databind.deser.BeanDeserializer._deserializeUsingPropertyBased(BeanDeserializer.java:519) ~[jackson-databind-2.13.4.2.jar!/:2.13.4.2]
at com.fasterxml.jackson.databind.deser.BeanDeserializerBase.deserializeFromObjectUsingNonDefault(BeanDeserializerBase.java:1405) ~[jackson-databind-2.13.4.2.jar!/:2.13.4.2]
at com.fasterxml.jackson.databind.deser.BeanDeserializer.deserializeFromObject(BeanDeserializer.java:352) ~[jackson-databind-2.13.4.2.jar!/:2.13.4.2]
at com.fasterxml.jackson.databind.deser.BeanDeserializer.deserialize(BeanDeserializer.java:185) ~[jackson-databind-2.13.4.2.jar!/:2.13.4.2]
at com.fasterxml.jackson.databind.deser.DefaultDeserializationContext.readRootValue(DefaultDeserializationContext.java:323) ~[jackson-databind-2.13.4.2.jar!/:2.13.4.2]
at com.fasterxml.jackson.databind.ObjectReader._bind(ObjectReader.java:2025) ~[jackson-databind-2.13.4.2.jar!/:2.13.4.2]
at com.fasterxml.jackson.databind.ObjectReader.readValue(ObjectReader.java:1175) ~[jackson-databind-2.13.4.2.jar!/:2.13.4.2]
at com.fasterxml.jackson.jaxrs.base.ProviderBase.readFrom(ProviderBase.java:803) ~[jackson-jaxrs-base-2.13.4.jar!/:2.13.4]
at org.glassfish.jersey.message.internal.ReaderInterceptorExecutor$TerminalReaderInterceptor.invokeReadFrom(ReaderInterceptorExecutor.java:257) ~[jersey-common-2.26-b03.jar!/:na]
at org.glassfish.jersey.message.internal.ReaderInterceptorExecutor$TerminalReaderInterceptor.aroundReadFrom(ReaderInterceptorExecutor.java:236) ~[jersey-common-2.26-b03.jar!/:na]
at org.glassfish.jersey.message.internal.ReaderInterceptorExecutor.proceed(ReaderInterceptorExecutor.java:156) ~[jersey-common-2.26-b03.jar!/:na]
at org.glassfish.jersey.message.internal.MessageBodyFactory.readFrom(MessageBodyFactory.java:1082) ~[jersey-common-2.26-b03.jar!/:na]
at org.glassfish.jersey.message.internal.InboundMessageContext.readEntity(InboundMessageContext.java:874) ~[jersey-common-2.26-b03.jar!/:na]
at org.glassfish.jersey.message.internal.InboundMessageContext.readEntity(InboundMessageContext.java:808) ~[jersey-common-2.26-b03.jar!/:na]
at org.glassfish.jersey.client.ClientResponse.readEntity(ClientResponse.java:326) ~[jersey-client-2.26-b03.jar!/:na]
at org.glassfish.jersey.client.JerseyInvocation.translate(JerseyInvocation.java:881) ~[jersey-client-2.26-b03.jar!/:na]
... 33 common frames omitted
Caused by: java.lang.NullPointerException: Null virtualSize
at com.spotify.docker.client.messages.AutoValue_ImageInfo.<init>(AutoValue_ImageInfo.java:91) ~[docker-client-8.16.0.jar!/:8.16.0]
at com.spotify.docker.client.messages.ImageInfo.create(ImageInfo.java:97) ~[docker-client-8.16.0.jar!/:8.16.0]
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method) ~[na:na]
at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62) ~[na:na]
at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43) ~[na:na]
at java.base/java.lang.reflect.Method.invoke(Method.java:566) ~[na:na]
at com.fasterxml.jackson.databind.introspect.AnnotatedMethod.call(AnnotatedMethod.java:104) ~[jackson-databind-2.13.4.2.jar!/:2.13.4.2]
at com.fasterxml.jackson.databind.deser.std.StdValueInstantiator.createFromObjectWith(StdValueInstantiator.java:291) ~[jackson-databind-2.13.4.2.jar!/:2.13.4.2]
... 51 common frames omitted