Well, I’ve been trying to use shinyproxy with the R development version, to work with an app that I’m developing.
I’ve tried to use the shinyproxy-demo image with an installation of Rdevel instead of R, but when shinyproxy starts, shows me the error Container did not respond in time.
My Dockerfile:
## Emacs, make this -*- mode: sh; -*-
## start with the Docker 'base R' Debian-based image
FROM r-base:latest
## This handle reaches Carl and Dirk
MAINTAINER "Carl Boettiger and Dirk Eddelbuettel" rocker-maintainers@eddelbuettel.com
## Remain current
RUN apt-get update -qq \
&& apt-get dist-upgrade -y
## From the Build-Depends of the Debian R package, plus subversion
RUN apt-get update -qq \
&& apt-get install -t unstable -y --no-install-recommends \
bash-completion \
bison \
debhelper \
default-jdk \
g++ \
gcc \
gdb \
gfortran \
groff-base \
libblas-dev \
libbz2-dev \
libcairo2-dev/unstable \
libcurl4-openssl-dev \
libjpeg-dev \
liblapack-dev \
liblzma-dev \
libncurses5-dev \
libpango1.0-dev \
libpcre3-dev \
libpng-dev \
libreadline-dev \
libtiff5-dev \
libx11-dev \
libxt-dev \
mpack \
subversion \
tcl8.6-dev \
texinfo \
texlive-base \
texlive-extra-utils \
texlive-fonts-extra \
texlive-fonts-recommended \
texlive-generic-recommended \
texlive-latex-base \
texlive-latex-extra \
texlive-latex-recommended \
tk8.6-dev \
x11proto-core-dev \
xauth \
xdg-utils \
xfonts-base \
xvfb \
zlib1g-dev
## Check out R-devel
RUN cd /tmp \
&& svn co https://svn.r-project.org/R/trunk R-devel
## Build and install according the standard 'recipe' I emailed/posted years ago
RUN cd /tmp/R-devel \
&& R_PAPERSIZE=letter \
R_BATCHSAVE="--no-save --no-restore" \
R_BROWSER=xdg-open \
PAGER=/usr/bin/pager \
PERL=/usr/bin/perl \
R_UNZIPCMD=/usr/bin/unzip \
R_ZIPCMD=/usr/bin/zip \
R_PRINTCMD=/usr/bin/lpr \
LIBnn=lib \
AWK=/usr/bin/awk \
CFLAGS=$(R CMD config CFLAGS) \
CXXFLAGS=$(R CMD config CXXFLAGS) \
./configure --enable-R-shlib \
--without-blas \
--without-lapack \
--with-readline \
--without-recommended-packages \
--program-suffix=dev \
&& make \
&& make install \
&& rm -rf /tmp/R-devel
# set host and port
COPY Rprofile.site /usr/lib/R/etc/
## Set Renviron to get libs from base R install
RUN echo "R_LIBS=\${R_LIBS-'/usr/local/lib/R/site-library:/usr/local/lib/R/library:/usr/lib/R/library'}" >> /usr/local/lib/R/etc/Renviron
## Set default CRAN repo
RUN echo 'options(repos = c(CRAN = "https://cran.rstudio.com/"), download.file.method = "libcurl")' >> /usr/local/lib/R/etc/Rprofile.site
RUN cd /usr/local/bin \
&& mv R Rdevel \
&& mv Rscript Rscriptdevel \
&& ln -s Rdevel RD \
&& ln -s Rscriptdevel RDscript
RUN apt-get install -y libssl-dev
RUN apt-get install -y libxml2-dev
# packages needed for basic shiny functionality
RUN Rdevel -e "install.packages('shiny', repos='https://cloud.r-project.org')"
RUN Rdevel -e "install.packages('shinyTree', repos='https://cloud.r-project.org/')"
RUN Rdevel -e "install.packages('shinyjs', repos='https://cloud.r-project.org/')"
RUN Rdevel -e "install.packages('shinythemes', repos='https://cloud.r-project.org/')"
RUN Rdevel -e "source('https://bioconductor.org/biocLite.R'); biocLite('graph')"
RUN Rdevel -e "source('https://bioconductor.org/biocLite.R'); biocLite('RBGL')"
RUN Rdevel -e "source('https://bioconductor.org/biocLite.R'); biocLite('Rgraphviz')"
COPY VariantF /root/VariantF
EXPOSE 3838
CMD ["Rdevel", "-e", "shiny::runApp('/root/VariantF')"]